Delta Workshop Materials

1 Overview

The Delta Science Program is once again partnering with the National Center for Ecological Analysis and Synthesis (NCEAS) to convene a collaborative data synthesis working group. Delta Synthesis Working Groups receive advanced data science and statistics training with immediate opportunities to use those newly acquired skills to analyze available data and produce relevant research and data products.

LearningLearning Objectives

After completing this workshop, you will be able to:

  • Use tidy data practices to effectively manage data
  • Identify best practices and tools for optimizing collaboration (like Git & GitHub)
  • Implement reproducible scientific workflows throughout all aspects of a project
  • Summarize scientific analyses and results clearly and effectively by using computational notebook files, GitHub * webpages, and R packages like ggplot2 and shiny

2 Course Schedule

Table Color Legend: Technical Topic; Non-Technical Topic; Synthesis Work

Screenshot of visual version of schedule. All information is also included in the table version of the schedule

Day Time Module Name Primary Instructor
1 8:30 - 9a Welcome & Intro to Week -
1 9 - 10a Publishing Synthesis Data Jim Regetz
1 10 - 10:30a Break -
1 10:30 - 12p Programmatic Data Access Jim Regetz
1 12 - 1p Lunch -
1 1 - 2:30p Free Synthesis Work -
1 2:30 - 3p Break -
1 3 - 4:30p Free Synthesis Work -
Day Time Module Name Primary Instructor
2 8:30 - 10a Advanced Git/GitHub Nick Lyon
2 10 - 10:30a Break -
2 10:30 - 12p Science Communication Nick Lyon
2 12 - 1p Lunch -
2 1 - 2:30p Free Synthesis Work -
2 2:30 - 3p Break -
2 3 - 4:30p Free Synthesis Work -
Day Time Module Name Primary Instructor
3 8:30 - 10a Interactivity Part 1 (Shiny) Casey O’Hara
3 10 - 10:30a Break -
3 10:30 - 12p Interactivity Part 2 (Dashboards & Reports) Jim Regetz
3 12 - 1p Lunch -
3 1 - 2:30p Make a Website with Quarto Nick Lyon
3 2:30 - 3p Break -
3 3 - 4:30p Free Synthesis Work -
Day Time Module Name Primary Instructor
4 8:30 - 10a Synthesis Stats (tidymodels) Casey O’Hara
4 10 - 10:30a Break -
4 10:30 - 12p Raster Spatial Data Casey O’Hara
4 12 - 1p Lunch -
4 1 - 2:30p Free Synthesis Work -
4 2:30 - 3p Break -
4 3 - 4:30p Free Synthesis Work -
Day Time Module Name Primary Instructor
5 8:30 - 10a Free Synthesis Work -
5 10 - 10:30a Break -
5 10:30 - 12p Free Synthesis Work -
5 12 - 1p Lunch -
5 1 - 1:15p Survey -
5 1:15 - 2:30p Synthesis Work: Presentations and Wrap Up -
5 2:30 - 3p Adjourn -

3 Code of Conduct

By participating in this activity you agree to abide by the NCEAS Code of Conduct.

4 About this book

These written materials are the result of a continuous and collaborative effort at NCEAS to help researchers make their work more transparent and reproducible. This work began in the early 2000’s, and reflects the expertise and diligence of many, many individuals. The primary authors are listed in the citation below, with additional contributors recognized for their role in developing previous iterations of these or similar materials.

This work is licensed under a Creative Commons Attribution 4.0 International License.

Citation: Casey O’Hara, Nick J. Lyon & Jim Regetz (2026), NCEAS Synthesis Skills Training for the Delta Science Program, April 2026, NCEAS Learning Hub. https://nceas-learning-hub.github.io/2026_delta_week3.

Content contributors: Ben Bolker, Amber E. Budden, Julien Brun, Angel Chen, Samantha Csik, Halina Do-Linh, Natasha Haycock-Chavez, S. Jeanette Clark, Julie Lowndes, Stephanie Hampton, Matt Jones, Samantha Katz, Nick J. Lyon, Erin McLean, Bryce Mecum, Casey O’Hara, Deanna Pennington, Karthik Ram, Jim Regetz, Tracy Teal, Camila Vargas Poulsen, Daphne Virlar-Knight, Leah Wasser.

This is a Quarto-built website. To learn more about Quarto sites visit https://quarto.org/docs/websites/.